AUTHOR OF THIS BLOG

DR ANTHONY MELVIN CRASTO, WORLDDRUGTRACKER

Nonanedioic acid, Azelaic acid

 spectroscopy, SYNTHESIS  Comments Off on Nonanedioic acid, Azelaic acid
Jun 292015
 

 

148

 

Nonanedioic acid

Azelaic acid

148
Name Nonanedioic acid
Synonyms Azelaic acid
Name in Chemical Abstracts Nonanedioic acid
CAS No 123-99-9
EINECS No 204-669-1
Molecular formula C9H16O4
Molecular mass 188.23
SMILES code O=C(O)CCCCCCCC(=O)O
Ricinolic acid
KMnO4 / KOH
reacts to
Nonanedioic acid ; Side reactions

1H NMR

1H NMR

1H-NMR: Nonanedioic acid
250 MHz, DMSO-d6
delta [ppm] mult. atoms assignment
1.25 m 6 H 4-H, 5-H, 6-H
1.47 m 4 H 3-H, 7-H
2.18 t (3J = 7.3 Hz) 4 H 2-H, 8-H
ca. 12 broad s 2 H COOH
2.49 DMSO

 

13C-NMR

13C NMR

13C-NMR: Nonanedioic acid
62.5 MHz, DMSO-d6
delta [ppm] assignment
23.9 C3, C7
27.6 C5
27.8 C4, C6
33.1 C2, C8
173.4 COOH
39.5 DMSO-d6

Azelaic acid(123-99-9)13CNMR

IR

IR

IR: Nonanedioic acid
[KBr, T%, cm-1]
[cm-1] assignment
3300-2500 O-H valence, superimposed on C-H valence
2962, 2887 aliph. C-H valence
1724 C=O valence, carboxylic acid

Oxidation of ricinoleic acid (from castor oil) with KMnO4 to azelaic acid

Reaction type: oxidation
Substance classes: alkene, carboxylic acid, renewable resources
Techniques: heating under reflux, stirring with magnetic stir bar, stirring with KPG stirrer, adding dropwise with an addition funnel, shaking out, extracting, evaporating with rotary evaporator, filtering, recrystallizing, heating with oil bath
Degree of difficulty: Medium

 

Operating scheme

Operating scheme

 

Equipment

Batch scale: 0.04 mol Ricinolic acid
round bottom flask 250 mL round bottom flask 250 mL three-necked flask 1000 mL three-necked flask 1000 mL
reflux condenser reflux condenser internal thermometer internal thermometer
addition funnel with pressure balance addition funnel with pressure balance heatable magnetic stirrer with magnetic stir bar heatable magnetic stirrer with magnetic stir bar
KPG stirrer KPG stirrer beaker 400 mL beaker 400 mL
beaker 250 mL beaker 250 mL Erlenmeyer flask 250 mL Erlenmeyer flask 250 mL
separating funnel separating funnel rotary evaporator rotary evaporator
suction filter suction filter suction flask suction flask
exsiccator with drying agent exsiccator with drying agent oil bath oil bath

Chromatogram

crude product chromatogram

TLC: crude product
TLC layer Merck silica gel 60 F254, 5 x 10 cm
mobile phase EtOH
staining reagent 0.1% solution of 2,6-dichlorophenolindophenol sodium salt in 95% ethanol
Rf (educt) 0.70
Rf (product) 0.60

PESHAWAR, PAKISTAN FOOD

 

Peshawar is one the oldest cities of South Asia. It is an entrance point of Pakistan from the Afghanistan. It was an important city of Subcontinent and a meeting and marketing place for the public of Middle East, India and central Asia. Afghan warriors used this way to enter into subcontinent.

.

NALLI GOSHT

Pakistani cooks prepare food for refugees in the Jalozai camp in Peshawar,

Food being prepared at Qissa Khuwani Bazaar in Peshawar on the eve of Eid Milad-

The Big Pot Tea Man of Peshawar

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Pd(II) catalyzed ortho C–H iodination of phenylcarbamates at room temperature using cyclic hypervalent iodine reagents

 spectroscopy, SYNTHESIS  Comments Off on Pd(II) catalyzed ortho C–H iodination of phenylcarbamates at room temperature using cyclic hypervalent iodine reagents
Jun 292015
 

A novel approach to access ortho iodinated phenols using cyclic hypervalent iodine reagents through palladium(II) catalyzed C–H activation has been developed through weak coordination. The reaction showed excellent regioselectivity, reactivity and good functional group tolerance. A unique mechanism was proposed.

Graphical abstract: Pd(ii) catalyzed ortho C–H iodination of phenylcarbamates at room temperature using cyclic hypervalent iodine reagents

Pd(II) catalyzed ortho C–H iodination of phenylcarbamates at room temperature using cyclic hypervalent iodine reagents

Xiuyun Sun,a   Xia Yao,a   Chao Zhanga and   Yu Rao*a
*Corresponding authors
aMOE Key Laboratory of Protein Sciences, Department of Pharmacology and Pharmaceutical Sciences, School of Medicine and School of Life Sciences, Tsinghua University, Beijing 100084, China
Chem. Commun., 2015,51, 10014-10017

DOI: 10.1039/C5CC02533H

Rao, Yuyu rao
tsinghua univerisity school of medicines logo

Zhang Chao

 Tsinghua University, Beijing
///
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trans-Cinnamamide , (2E)-3-Phenyl-2-propenamide

 Uncategorized  Comments Off on trans-Cinnamamide , (2E)-3-Phenyl-2-propenamide
Jun 272015
 

trans-Cinnamamide/(2E)-3-Phenyl-2-propenamide

195
Name trans-Cinnamamide
Synonyms (2E)-3-Phenyl-2-propenamide
Name in Chemical Abstracts 2-Propenamide, 3-phenyl-, (2E)-
CAS No 22031-64-7
EINECS No
Molecular formula C9H9NO
Molecular mass 147.18
SMILES code NC(=O)/C=C/c1ccccc1

 

1H NMR

 

1H NMR

1H-NMR: trans-Cinnamamide
250 MHz, DMSO-d6
delta [ppm] mult. atoms assignment
6.61 d (JAB= 15.9) 1 H C=CH-CO (2-H)
7.13 broad s 1 H NH
7.2-7.6 m 7 H CH (arom.) + NH + -CH=C (3-H)
7.42 d (JAB= 15.9) 1 H -CH=C (3-H)
6.53 d 1 H C=CH-CO (2-H, cinnamic acid)
7.82 d 1 H -CH=C (3-H, cinnamic acid)
2.5 s DMSO
3.33 s O-CH3 (tBu-OMe)
1.19 s C-CH3 (tBu-OMe)

 

13C-NMR

13C NMR

13C-NMR: trans-Cinnamamide
250 MHz, DMSO-d6
delta [ppm] assignment
122.31 C2 (=CH-)
127.52 CH arom.
128.90 CH arom.
129.42 C4 (arom.)
134.86 C quart. arom.
139.16 C3 (-CH=C)
166.68 C1 (-C(=O)NH2)
38.5-40.5 DMSO-d6

 

IR

IR

IR: trans-Cinnamamide
[KBr, T%, cm-1]
[cm-1] assignment
3375, 3175 N-H valence
3084 aliph. C-H valence, =C-H
1665 C=O valence, carboxamide
1610 alkene C=C valence
1580, 1495 arom. C=C valence

 

Chromatogram

crude product chromatogram

HPLC: crude product
column Phenomenex Luna C18; particle diameter 3 µm, L= 150 mm, ID= 4.6 mm
column temperature 25 °C
injection 5 µL
mobile phase 5% MeCN / H2O (0.0059% CF3COOH), gradient to 95% MeCN / H2O (40 min), 10 min isocratic
flow 1.0 mL/min
detector (UV 220 nm) percent concentration calculated from relative peak area


pure product chromatogram

HPLC: pure product
column Phenomenex Luna C18, particle diameter 3 µm, Länge 150 mm, Innendurchmesser 4.6 mm
column temperature 25 °C
injection 5 µL
mobile phase 5% MeCN/H2O (0.0059% CF3COOH), gradient to 95% MeCN/H2O (40 min), 10 min isocratic
flow 1.0 mL/min
detector (UV 220 nm) percent concentration calculated from relative peak area

 

 

 

 

Name trans-Cinnamamide
Synonyms (2E)-3-Phenyl-2-propenamide
Name in Chemical Abstracts 2-Propenamide, 3-phenyl-, (2E)-
CAS No 22031-64-7
EINECS No
Molecular formula C9H9NO
Molecular mass 147.18
SMILES code NC(=O)/C=C/c1ccccc1
trans-Cinnamoyl chloride
NH3
reacts to
trans-Cinnamamide + Hydrogen chloride

 

 

IR

IR

IR: trans-Cinnamamide
[KBr, T%, cm-1]
[cm-1] assignment
3375, 3175 N-H valence
3084 aliph. C-H valence, =C-H
1665 C=O valence, carboxamide
1610 alkene C=C valence
1580, 1495 arom. C=C valence

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Denpasar, bali, indonesia

  1. Denpasar – Wikipedia, the free encyclopedia

    https://en.wikipedia.org/wiki/Denpasar

    Denpasar (Indonesian: Kota Denpasar, Indonesian pronunciation: [dənˈpasar]) is the capital and the most populous city of the Indonesian province of Bali.

    Etymology – ‎History – ‎Geography – ‎Demography
    .
    Denpasar market, Denpasar is the capital of Bali Province. The main street of Denpasar is Gajah Mada street where is the main shopping center, .
    A very giant Ogoh-ogoh at a cross junction in Denpasar
    A view from the Kumbasari Market

    Airport of BaliPT (PERSERO) ANGKASA PURA I CABANG BANDARA NGURAH RAIGEDUNG WISTI SABHA LANTAI 3 BANDARA NGURAH RAIDENPASAR, BALI 80362

    Bali Airport (Ngurah Rai) Denpasar – Indonesia

    Bali Ngurah Rai International Airport, also known as Denpasar International Airport, is located in southern Bali, 13 km south of Denpasar. It is Indonesia’s third-busiest international airport.

    Bali Airport - Denpasar

    Bali Airport Check-in Counters

    Bali Airport Terminal Interior

    Bali Airport

    Bajak Laut Nasi Tempong & Seafood, Renon, Bali

    Sporting the growth of Denpasar residents’ likes for Nasi Tempong, Bajak Laut Nasi Tempong & Seafood sets on a different kind of path by combining Nasi Tempong with the other well-known Bali’s best: Seafood.

    Sets in the cozy neighborhood of Renon, Denpasar, Bajak Laut is the newest addition of restaurant openings in this area. From the down-to-earth food courts selling Ayam Goreng, Chinese food and Sup Kepala Ikan, to the more luxurious XO Suki & Cuisine, Ayucious, or the more established Bendega, Ikan Bakar Cianjur, and Hanamasa, Bajak Laut further marks Renon as a leading Denpasar’s culinary destination.

    Though opened really close to the market leader Nasi Tempong Indra, that with its aggressive market expansion in 2012 opens two new branches around Renon area alone, Bajak Laut however has what Indra has not: various choices of seafood comprising of fishes, shellfish, crabs, and shrimps. Therefore market wise, Bajak Laut is aiming at a slightly different crowds: those who loves the spicy Nasi Tempong, and those who loves Seafood; especially those too tired to go through all the traffic madness at Simpang Siur to reach Jimbaran.

    (Or believes it’s too touristy.)

    As the champion of this premise, Bajak Laut offers “Kepiting Asap ala Bajak Laut”, which are crabs cooked in sweet and savory rubs, then grilled inside banana leaf wraps to enhance its aroma. The result is a treat not only delicious to the taste but also to the sight.

    Ingredients used for the rub is dominated with daun salam, or Indonesian bay leaves. For those familiar with gepuk; fried beef first marinated in spices and brown sugar, Kepiting Asap ala Bajak Laut has an almost identical seasoning.

    One portion of Kepiting Asap ala Bajak Laut consisting of two crabs weighing total of 5 ons (500 grams). At 120K they’re good for two, while the 7 ons one costs 150K. For the 5 ons portion, the crab size is a bit small, hence eating them requires quite an effort.

    Nasi Tempong is a good example how a food originated from outside Bali could becomes a local hit. Originated from Banyuwangi, Nasi Tempong managed to get quite followers due to its main character of super spicy sambal. Nasi Tempong usually served as a package consisting of white rice, steamed vegetables, tahu, tempe, anemic salted fish, and super spicy sambal, and a main dish of either fried chicken, or other kind of proteins.

    While I’m not a die-hard spicy food fans, I found their Nasi Tempong quite palatable, especially since the stewed vegetables plus sambal that’s the core of every Nasi Tempong dish, is like a staple food in Western Java where I grew up.

    Service is polite and attentive, though we found it’s a bit hard to get attention from the waiters, except from the one stand by the front door. Beside of the seafood, the Nasi Tempong variations are sold around 12K to 45K,

    Starting December 2013 but don’t know for how long, Bajak Laut Nasi Tempong & Seafood offers a special discount for their set menu, at 150K for 4 people, and 250K for 6 people.

    One annoying condition that we have to face as well, that even though the premise is fully airconed, people are allowed to smoke! And here in Denpasar, Bali, sadly it’s the common case with many eating premises, and Bajak Laut is no exception. Therefore while their crab is quite delicious, until Bajak Laut separates its smoking and non-smoking section it poses health hazard to your youngsters. (byms)

    Bajak Laut Nasi Tempong & Seafood
    Jl. Cok Agung Tresna No.23, Renon, Denpasar, Bali
    (0361) 7984007

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11-Chloro-1-undecene

 Uncategorized  Comments Off on 11-Chloro-1-undecene
Jun 272015
 

11-Chloro-1-undecene

125
Name 11-Chloro-1-undecene
Synonyms
Name in Chemical Abstracts 1-Undecene, 11-chloro-
CAS No 872-17-3
EINECS No
Molecular formula C11H21Cl
Molecular mass 188.74
SMILES code ClCCCCCCCCCC=C

 

 

 

10-Undecen-1-ol
SOCl2
reacts to
11-Chloro-1-undecene + Hydrochloric acid + Sulfur dioxide

1H-NMR

1H NMR

1H-NMR: crude product
300 MHz, CDCl3
delta [ppm] mult. atoms assignment
1.1-1.5 m 12 H CH2
1.75 tt 2 H 2-H
2.02 dt 2 H 9-H
3.51 t 2 H 1-H
4.95 2xdd 2 H 11-H
5.80 m 1 H 10-H


1H NMR

1H-NMR: 11-Chloro-1-undecene
300 MHz, CDCl3
delta [ppm] mult. atoms assignment
1.1-1.5 m 12 H CH2
1.75 tt 2 H 2-H
2.02 dt 2 H 9-H
3.51 t 2 H 1-H
4.95 2xdd 2 H 11-H
5.80 m 1 H 10-H

 

13C-NMR

13C NMR

13C-NMR: crude product
75.5 MHz, CDCl3
delta [ppm] assignment
32.7 C2
33.9 C9
45.0 C1
114.1 C11
139.1 C10
76.5-77.5 CDCl3


13C NMR

13C-NMR: 11-Chloro-1-undecene
75.5 MHz, CDCl3
delta [ppm] assignment
32.7 C2
33.9 C9
45.0 C1
114.1 C11
139.1 C10
76.5-77.5 CDCl3

 

IR

IR

IR: 11-Chloro-1-undecene
[Film, T%, cm-1]
[cm-1] assignment
3077 aliph. C-H valence, H2C=C
2927, 2855 aliph. C-H valence
993, 910 deform. C-H, H2C=C
723 C-Cl valence

 

Operating scheme

Operating scheme

 

 

 

 

Chromatogram

crude product chromatogram

GC: crude product
column DB-WAX, L=30 m, d=0.33 mm, film=0.25 µm
inlet on column injection, 0.2 µL
carrier gas H2, 40 cm/s
oven 90°C (5 min), 10°C/min –> 240°C (30 min)
detector FID, 270°C
integration percent concentration calculated from relative peak area


pure product chromatogram

GC: pure product
column DB-WAX, L=30 m, d=0.33 mm, film=0.25 µm
inlet on column injection, 0.2 µL
carrier gas H2, 40 cm/s
oven 90°C (5 min), 10°C/min –> 240°C (30 min)
detector FID, 270°C
integration percent concentration calculated from relative peak area

8 must-see places in Southeast Asia for great views: bucket list 2015

8 must-see places in Southeast Asia for great views: bucket list 2015
Southeast Asia is more than food and culture; here are 8 eye-candy places with magnificent views for a highly memorable trip!

Not just a melting pot of cultures, religions, history and food, Southeast Asia offers many picturesque spots that your eyes will thank you for. Whether it’s enjoying a sunset from a mountain top or just taking in the bucolic sights of Mother Nature’s hand-sculpted terrains, you’ll attest that these 8 suggestions offer some pretty unique charms that take your breath away.

 

1. Inle Lake, Myanmar

Myanmar has become a hotspot for the intrepid traveller and opens up plenty of opportunities to lap up many of its natural scenic wonders. If you’re heading there, a must-see place is Inle Lake renowned for its vast body of water where one can spot fishing communities and homes built on stilts.

Not only is the lake famous for its photogenic quality, you can hire guides to visit fish farms and shop at handicraft stores. Inle Lake’s picturesque charm comes from watching leg-rowing fisherman haul their catch during sunset. Find cheap flights to the capital Naypyidaw and best time to travel there is between November and February.

Read more: Top 10 things to do in Myanmar

Be mesmerised by the scenic Inle Lake in Myanmar

 

 

2. Tiger’s Nest Monastery, Bhutan

Perched some 3,000 metres above sea level and build in 1692, Bhutan’s Taktsang monastery, or more popularly known as Tiger’s Nest, is a must-see when you come to this nation steeped in Buddhist history. Getting there is not for the faint-hearted as one has to traipse through a hilly, rocky and undulating path to reach the peak.

Do hire guides to reach the apex successfully, and you’ll be rewarded by 360-views of sylvan mountain tops. Spring time from March to May is the best time to visit Bhutan and Drukair Royal Airlines of Bhutan flies theredirect.

Read more: 5 tips on tipping when travelling in Southeast Asia

Take in the lofty, airy views of Tiger’s Nest in Bhutan

 

 

3. Mount Kinabalu, Sabah, Malaysia

Recognised as one of the tallest peaks in Southeast Asia, Mount Kinabalu is a trekker’s dream come true. Getting to the summit takes about two days to accomplish. There is a 4-km climb to Laban Rata lodge where you can rest and replenish on sustenance. The next day is a 2-km climb to Low’s Peak.

The trek may be arduous but with lush rainforest terrain, there’s always something new at every corner to keep you distracted. About a kilometer away from the peak, the terrain changes to rock, stone and pebbles complemented by vegetation normally found in cooler climes. To catch the sunrise on the second day, it’s advisable to depart at 2am but remember to bring extra clothing as the mercury will drop to 2 degrees Celsius.

Read more: 5 fun extreme sports in Singapore for the adventure seekers

The scenic misty peaks of Mt. Kinabalu also offer spots for picturesque photos

 

 

4. Palawan Island, Luzon, Philippines

Recently coined by Huffington Post as “The Most Beautiful Island In the World” while Conde Nast Traveler’sReader Choice Awards named it “The Top Island in the World”, Palawan island is quite the magnificent sight. With its beautiful azure waters infused with emerald hues, it’s also hard to refute such claims.

Dotting the waters are jungled-filled islands, each with a distinctive hill rising above the ocean. Just by half-hour domestic flight from Manila airport, once you soar above Palawan’s oceanic landscape, you’ll feel like you’ve reached Shangri-la. Whether it’s island-hopping or sea kayaking, fun-filled times are never in short supply.

Read more: 12 best beaches in Asia Pacific

The beaches of Palawan have powdery white sand!

 

 

5. Penang National Park, Malaysia

Penang is truly a foodie paradise but many people are flocking there for other reasons, one being its attractive natural environment. Located just west of mainland Malaysia, a flight from Singapore is slightly over an hour.

With plenty of diverse lifestyle choices and entertainment options, Penang also has its idyllic charms. Aside from its UNESCO-designated George Town, the Penang National Park located on the North-Western side of the island rewards one with rich rainforests, a diverse ecosystem and some 1,381 hectares of wetlands to indulge trekking fanatics and eco-photographers.

Read more: Best cruises from Singapore

Unique flora and fauna found at Penang National Park makes for picture perfect memories too

 

 

6. Tanah Lot Temple, Bali, Indonesia

Bali is never in short supply of mysticism and wonder. A two-hour flight out of Singapore is all it takes to enjoy a short vacation. And of course, visiting its picturesque sea temple on the west coast of Bali, Tanah Lot, promises many Kodak moments. A simple traipse during low-tide rewards a sight to behold too – a Hindu shrine ensconced among lush trees perched on a rock is postcard-worthy from any angle. Framed by crashing waves, Tanah Lot Temple brims with a dab of fable and mysticism that makes it a must-see when visiting Bali!

Read more: Top 5 places to go diving in Southeast Asia

Tanah Lot in Bali offers scenic views of splendid structures amidst crashing waves

 

 

7. Angkor Wat, Siem ReapCambodia

Angkor Wat became even more famous, thanks to the Tomb Raider movie starring Angelina Jolie. Founded in the 12th Century, it is also the 7th Wonder of the World. This Khmer temple’s architecture will seize the gaze of any first-time visitor. At the centre of this city, within a moat, is a towering stupa that provides sylvan views of its 3.6km, vine-covered outer wall. Just 5.5km north of Siem Reap, the Angkor Archaeological Park is a must-see for travellers with a penchant for history and artefacts.

Read more: Top 10 most romantic places in Asia (part 2)

Angkor Wat’s lush views are both captivating and mysterious

 

 

8. Halong Bay, Hanoi, Vietnam

Halong Bay, which means “Bay of Descending Dragons”, is a unique karst topography carved out by Mother Nature. The UNESCO World Heritage site offers views of vertical formations which are rich in dense vegetation. A boat cruise meandering through any of the 1,969 islets is both tranquil and insightful. Avoid the monsoons from June to September and from January to March, but visit the high seasons to enjoy sunny skies that won’t put a damper on your exploration plans of the natural outlying islets. After a three-hour fight to Hanoi from Singapore, take a five-hour road trip via mini bus to the port; it costs around USD 6 (SGD 7.50) and can be arranged upon arrival.

Read more: Top 10 most romantic places in Asia (part 1)

Halong Bay in Vietnam promises oceanic vistas

 

 

All these places will astound you in a multi-sensory way. Whichever activity you decide to experience at these destinations, you’ll agree that many good memories await.

 

 

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Sun Kim ……Quality-by-Design Evangelist

 Uncategorized  Comments Off on Sun Kim ……Quality-by-Design Evangelist
Jun 252015
 

Sun Kim

Sun Kim

QbDWorks.com – Quality by Design for Pharma, Biotech, Medical Devices

Dr. Sun K. Kim is a Quality-by-Design Evangelist, transforming how Product Development is executed in the Biologics, Pharmaceutical and Medical Devices industry. In addition, he teaches at Keio University and Stanford University. His current focus of research is Quality-by-Design, Agile Development of Drugs and Therapeutics.

He received his MS and PHD in Mechanical Engineering at Stanford University. Sun was recently a Professor at Keio University in Japan. Prior to Silicon Valley days, he served in the Korean Army and worked at BMW in Munich, Germany

  • Sun Kim – Google+

    https://plus.google.com/104532120968165429422

    Sun Kim. Worked at QbDWorks. Attended Stanford University. Lives in San Francisco, CA. 2,886 views … QbD Risk Assessment – Quality by Design. 1.

    • Sun Kim – YouTube

      https://www.youtube.com/channel/UCoWqD615csn0MUEXDW2O2Qg

      QbDWorks share what works and does not when implementing Quality-by-Design in the Biotech, Biologics, Pharmaceutical and Medical Devices Industry.

      • Sun Kim | Facebook

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        • Sun Kim is on Facebook. Join Facebook to connect with Sun Kim and others you may know. Facebook gives people the power to share and makes the world …

 

Sun Kim

Experience

Quality by Design – Founder

QbDWorks

 – Present (2 years 6 months)http://QbdWorks.com

Founder of QbDWorks.com

Quality by Design for Biotech, Pharmaceutical and Medical Devices – Quality by Design Tools and Case Studies

Lecturer

Stanford University

 – Present (10 years)Stanford, CA

Teach Design for Manufacturing, Robust Design, Design of Experiments

Master Black Belt in Quality-by-Design, Lean Six Sigma, Sr. Manager

Bayer HealthCare

 –  (2 years 7 months)Berkeley, CA

Sr. Manager, Master Black Belt in Quality-by-Design, Design for Lean Six Sigma,
Leading Business Process Management

Design for Excellence Evangelist

Abbott

 –  (1 year 9 months)

Master Black Belt (Lean Six Sigma), Project Management Professional, Scrum Master

Assistant Professor of Graduate School of Systems Design and Management Assistant

Keio University

 –  (3 years 1 month)

http://www.sdm.keio.ac.jp/en/faculty/kim_s.html

Lecture and advise graduate-level, professional students on system and product design, design thinking, creative brainstorming methodologies, prototyping, project management and business development. Solicited 15 industry project partners. Generated $35,000/year after developing non-degree curriculum for professionals. Co-Investigator of research projects of $50,000: Indoor Location-based Services Technology for Mobile Devices. Consults manufacturing companies (Hitachi, Toshiba) on growth strategies for Service Business Innovation. Others include developing cost simulation tool of product design based on injection molding, design for manufacturing and healthcare delivery systems. Began as a lecturer in Feb. 2008 to co-develop a project-based design curriculum, Active Learning Program Sequence (ALPS), educating over 100 graduate students every year.

Invited as an Assistant Professor in June, 2009.

Research, Teaching Assistant

Stanford University

 –  (3 years 10 months)

Lectured, coached and managed over 40 multi-disciplinary teams on Design for Manufacturing projects from Biomedical device (Medtronic, Maquet, St. Jude Medical, etc.) and automotive companies (Toyota, Nissan, GM, etc.). Served as the main research associate of Toshiba Corporation Six-Sigma Consulting Inc., developing systems design and manufacturing programs for Toshiba employees. Innovative projects were mobile personal-assistant IT system and agile transportation infrastructure.

Industry-sponsored Projects

Stanford University

 –  (4 years 10 months)

Maquet Cardiovascular: Coached and led a 3 member team in redesigning the crimping process of Hemashield Grafts, resulting in cost reduction of $75,000 and operators’ medical costs from injuries.

Satiety (Bariatric Surgery Device for Obesity Treatment) Design for Manufacturing Project: Coached a 3 member team in redesigning the packaging and supply chain for the Toga System, resulting in supply chain efficiency of 50% improvement by applying Lean and Errorproofing (Poka Yoke) Techniques.

Medtronic Vascular: Coached a 4 member team in redesigning the manufacturing line of a stent-graft, resulting in 73% reduction of lead time and increase in reliabilty and performance. Observed over 5 vascular and general surgery cases. http://www.youtube.com/watch?v=RkA2TyCsV0A

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Toshiba

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Johnson & Johnson

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NeoGuide Systems

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Stanford Linear Accelerator Center

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Stanford University

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Ph.D, Mechanical Engineering

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MS, Mechanical Engineering

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A New Project-Based Curriculum of Design Thinking with Systems Engineering Techniques

International Journal of System of Systems Engineering

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Agile Project Management for Root Cause Analysis Projects

International Conference on Engineering Design

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A New Project-Based Curriculum of Design Thinking with Systems Engineering Techniques

Council of Engineering Systems Universities

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Evaluation of Design for Service Innovation Curriculum: Validation Framework and Preliminary Results

nternational Journal of Services Technology and Management

2011

A Validation Regarding Effectiveness of Scenario Graph

ASME International Design Engineering Technical Conferences

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Wants Chain Analysis: Human-centered Method for Analyzing and Designing Social Systems

International Conference on Engineering Design

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Scenario-based Amorphous Design (SAD) Framework for a Location-based Services Technology

Mobile Human Computer Interaction

2010

Transforming Seamless Positioning Technology into a Business using a Systems Design Approach—Scenario-based Amorphous Design

IEEE- International Systems Conference

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Design for Service Innovation: A Methodology for Designing Service as a Business for Manufacturing Companies

International Journal of Services Technology and Management

2010

Preliminary Validation of Scenario-based Design for Amorphous Systems

International Conference on Systems Engineering

2010

Tools for Project-based Active Learning of Amorphous Systems Design: Scenario Prototyping and Cross Team Peer Evaluation

ASME International Design Engineering Technical Conferences

2009

Active Learning Project Sequence: Capstone Experience for Multi-disciplinary System Design and Management Education

International Conference on Engineering Design

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Demystifying Ambiguity in The Design of Amorphous Systems

International Conference on Systems Engineering

2009

Scenario-based Design for Amorphous Systems

ASME International Mechanical Engineering Congress and Exposition

2008

Analysis and Design Methodology for Recognizing Opportunities and Difficulties for Product-based Services

Information Processing Society of Japan (IPSJ) Journal

2007

Scenario Graph: Discovering new business opportunities and Failure Modes,”

ASME International Design Engineering Technical Conferences

2007

Analysis and Design Methodology for Product-based Services

Annual Conference of the Japanese Society for Artificial Intelligence

2007

Analysis and Design Methodology for Recognizing Opportunities and Difficulties for Product-based Services

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2007

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Gatifloxacin

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Jun 182015
 
Gatifloxacin.svg
GATIFLOXACIN
BMS-206584, CG-5501, AM-1155, Zymar, Bonoq, Gatiflo, AM-1155
(±)-1-Cyclopropyl-6-fluoro-8-methoxy-7-(3-methyl-1-piperazinyl)-4-oxo-1,4-dihydroquinoline-3-carboxylic acid
Gatifloxacin sold under the brand names GatifloTequin and Zymar, is an antibiotic of the fourth-generation fluoroquinolonefamily,[1] that like other members of that family, inhibits the bacterial enzymes DNA gyrase and topoisomerase IVBristol-Myers Squibb introduced Gatifloxacin in 1999 under the proprietary name Tequin for the treatment of respiratory tract infections, having licensed the medication from Kyorin Pharmaceutical Company of Japan. Allergan produces it in eye-drop formulation under the names Zymar and Zymaxid. In many countries, gatifloxacin is also available as tablets and in various aqueous solutions forintravenous therapy.
Originally developed at Kyorin, gatifloxacin was first licensed to Gruenenthal in Europe, and that company still maintains rights to the oral and injectable formulations of the product. In October 1996, Kyorin licensed gatifloxacin to BMS, granting the company development and marketing rights in the U.S., Canada, Australia, Mexico, Brazil and certain other markets. In 2006, rights to the compound were returned by BMS. Subsequently, Senju and Kyorin signed a licensing agreement regarding the development of ethical eye drops containing the fluoroquinolone. In April 2000, Sumitomo Dainippon Pharma agreed to comarket the oral formulation in Japan. In August of that year, Allergan in-licensed gatifloxacin from Kyorin, gaining development and commercialization rights to the drug in all territories except Japan, Korea, China and Taiwan. The India-based Lupin Pharmaceuticals signed an agreement in June 2004 with Allergan to promote the ophthalmic solution of gatifloxacin in the pediatric specialty area in the U.S. PediaMed Pharmaceuticals also holds rights to the drug. In 2009, Kyorin licensed the drug candidate to Senju in China.
Gatifloxacin is the common name for (±)-1-cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-(3-methyl-1-piperazinyl)-4-oxo-3-quinolinecarboxylic acid (1), one of the most important broad-spectrum antibacterial agents and a member of the fourth-generation fluoroquinolone family.(1)Fluoroquinolones inhibit the enzyme DNA gyrase (topoisomerase II), which is responsible for the supercoiling of the DNA double helix, preventing the replication and repair of bacterial DNA and RNA.(2) Gatifloxacin (1) reached the market in 1999 under the brand name Tequin for the treatment of respiratory tract infections. The drug is available as tablets and aqueous solutions for intravenous therapy as well as eye drop formulation (Zymar).
To date, there are several processes described for the preparation of gatifloxacin, which can be grouped into two main categories: direct substitution of the 7-position fluorine atom of 1-cyclopropyl-6,7-difluoro-1,4-dihydro-8-methoxy-4-oxo-3-quinolinecarboxylic acid (2) by 2-methylpiperazine (Scheme 1),(3-5) and through boron chelate-type intermediates to overcome the diminished reactivity induced by the 8-methoxy group, which uses as starting material the ethyl ester derivative 3 (Scheme 2).(6-9)
SCHEME1
Figure
SCHEME2
Figure
  1. 1.
    Mather, R.; Karenchak, L. M.; Romanowski, E. G.; Kowalski, R. P. Am. J. Ophthalmol.2002, 133 ( 4) 463

  2. 2.
    Corey, E. J.; Czakó, B.; Kürti, L. Molecules and Medicine; Wiley: NJ, 2007; p 135.

  3. 3.
    Masuzawa, K.; Suzue, S.; Hirai, K.; Ishizaki, T. 8-Alkoxyquinolonecarboxylic acid and salts thereof excellent in the selective toxicity and process of preparing the same EP 0 230 295 A3, 1987.

  4. 4.
    Niddam-Hildesheim, V.; Dolitzky, B.-Z.; Pilarsky, G.; Steribaum, G. Synthesis of Gatifloxacin WO 2004/069825 A1, 2004.

  5. 5.
    Ruzic, M; Relic, M; Tomsic, Z; Mirtek, M. Process for the preparation of Gatifloxacin and regeneration of degradation products WO 2006/004561 A1, 2006.

  6. 6.
    Iwata, M.; Kimura, T.; Fujiwara, Y.; Katsube, T. Quinoline-3-carboxylic acid derivatives, their preparation and use EP 0 241 206 A2, 1987.

  7. 7.
    Sanchez, J. P.; Gogliotti, R. D.; Domagala, J. M.; Garcheck, S. J.; Huband, M. D.; Sesnie,J. A.; Cohen, M. A.; Shapiro, M. A. J. Med. Chem. 1995, 38, 4478

  8. 8.
    Satyanarayana, C.; Ramanjaneyulu, G. S.; Kumar, I. V. S. Novel crystalline forms of Gatifloxacin WO 2005/009970 A1 2005.

  9. 9.
    Takagi, N.; Fubasami, H.; Matsukobo, H.; (6,7-Substituted-8-alkoxy-1-cyclopropyl-1,4-dihydro-4-oxo-3-quinolinecarboxylic acid-O3,O4)bis(acyloxy-O)borates and the salts thereof, and methods for their manufacture EP 0 464 823 A1, 1991.

………………………….

WO 2005009970

http://www.google.com/patents/WO2005009970A1?cl=en

preparation of Gatifloxacin hemihydrate from Ethyl-1- Cyclopropyl-6, 7-difluoro-8-methoxy-4-oxo-l, 4-dihydro-3-quinoline carboxylate through boron difluoride chelate. Ethyl-1-cyclopropyl- 6, 7-difluoro-8-methoxy-4-oxo-l, 4-dihydro-3-quinoline carboxylate is reacted with aqueous hydrofluoroboric acid followed by condensation with 2-methyl piperazine in polar organic solvent resulting in an intermediate l-Cyclopropyl-7- (3-methyl piperazin-1- yl). -6-fluoro-8-methoxy-4-oxo-l, 4-dihydro-3-quinoline carboxylic acid boron difluoride chelate. This intermediate may be further hydrolyzed to yield Gatifloxacin. Gatifloxacin so obtained may needs purification to yield high purity product. However to obtain directly high purity Gatifloxacin it is desirable to isolate the intermediate by cooling to low temperatures . Treating with an alcohol or mixture of alcohols purifies this intermediate. The purified condensed chelate in aqueous ethanol on hydrolysis with triethylamine followed by crystallization in ethanol gives Gatifloxacin hemihydrate with high purity.

STAGE – I:

 

Figure imgf000006_0001

Ethyl l-cyclopropyl-6,7-difluoro-8-met oxy l-Cycloproρyl-6, 7-difluoro-8-methoxy -4-oxo-l, -dihydro-3-quinoline -4-oxo-l, 4-dihydro-3-quinoline carboxylate carboxylic acid boron difluoride chelate

STAGE – II :

 

Figure imgf000007_0001

l-Cycloprop l-7- ( 3-methylpiperazin-l-yl.

Figure imgf000007_0002

6-fluoro~8-methoxy-4-oxo-l , 4-dihydro-3- carboxylicacid borondifluoride chelate quinoline carboxylicacid borondifluoride chelate

STAGE -III :

 

Figure imgf000007_0003

l-Cyclopropyl-7- (3- ethylpiperaz.in-l-yl . GATIFLOXACIN

-6-fluoro-8-methoxy-4-oxo-l , 4-dihydro-3- quinoline carboxylicacid borondifluoride chelate

Example-I: Preparation of Gatifloxacin • with isolation of intermediate (boron difluoride chelate derivative)

Stage-1: Preparation of l-cyclopropyl-6, 7-di luoro-8-methoxy-4-oxo- 1, 4-dihydro-3-quinoline carboxylic acid boron difluoride chelate. Ethyl-l-cyclopropyl-6, 7-difluoro-8-methoxy-4-oxo-l, -dihydro-3- quinόline carboxylate (100g)is suspended in ,40%aq..hydrofluoroboric acid -(1000 ml). Temperature of • the reaction mass is raised and maintained at 95°C to 100°C for 5hrs followed by cooling to 30°C – 35°C. Water (400 ml) is added and maintained at 25°C – 30°C for 2hrs . Product is filtered, washed with water (500 ml) and dried at 40°C – 45°C to constant weight. Dry weight of the product: 101.6 g (Yield: 95.8 %)

Stage-2: Preparation of 1- Cyclopropyl-7- (3-methylpiperazin-l-yl) – 6-fluoro-8-methoxy-4-oxo-l, -dihydro-3-quinoline carboxylic acid boron difluoride chelate

100 g of Boron difluoride chelate derivative prepared as above in stage-1 is suspended in acetonitrile (800 ml) , to that 2-methyl piperazine (44.0 g, 1.5 mole equiv.) is added and mixed for 15 min to obtain a clear solution. The reaction mass is maintained at 30°C – 35°C for 12 hrs followed by cooling to -10°C to -5°C. The reaction mass is maintained at -10°C to -5°C for 1 hr. The product is filtered and dried at 45°C – 50°C to constant weight. Dry weight of the product: 116.0 g (Yield: 93.9 %) .

The condensed chelate (100 g) prepared as above is suspended in methanol (1500 ml), maintained at 40°C – 45°C for 30 min. The reaction mass is gradually cooled, maintained for 1 hr at -5°C to 0°C. The product is filtered, washed with methanol (50 ml) and dried at 45°C – 50°C to constant weight. Dry weight of the product: 80.0 g (Yield: 80.0 %)

Stage -3: Preparation of Gatifloxacin (Crude)

The pure condensed chelate (100.0 g) prepared as above in stage-2 is suspended in 20% aq. ethanol (1000 ml) , the temperature is raised and maintained at 75°C to 80°C for 2 hrs. The reaction mass is cooled, filtered to remove insolubles, distilled under vacuum to remove solvent. Fresh ethanol (200 ml) is added and solvent is removed under vacuum at temperature below 50°C. Ethanol (200 ml) is added to the residue and gradually cooled to -10°C to -5°C. The reaction mass is mixed at -10°C to -5°C for 1 hr and then filtered. The wet cake is washed with ethanol (25 ml) and dried at 45°C – 50°C to constant weight.

The dry weight of the Gatifloxacin is 83.3 g (Yield: 91.7 %)

Stage- 4: Purification of crude Gatifloxacin

Crude Gatifloxacin (100.0 g) prepared as above in stage-3 is suspended in methanol (4000 ml), the temperature is raised and maintained at 60°C to 65°C for 20 min. to get a clear solution. Activated carbon (5 g) is added, maintained for 30 min and the solution is filtered. The filtrate is concentrated to one third of its original volume under vacuum at temperature below 40°C. The reaction mass is gradually cooled and maintained at -10°C to -5°C for 2 hrs. The product is filtered, washed with methanol (50 ml) and dried at 45°C – 50°C to constant weight. The dry weight of the pure Gatifloxacin is 76.0 g (Yield: 76.0 %)

Example-II: Preparation of Gatifloxacin without isolation of intermediate (boron difluoride chelate derivative)

Stage-1: Preparation of l-cyclopropyl-6, 7-difluoro-8-methoxy-4- oxo-1, 4-dihydro-3-quinoline carboxylic acid boron difluoride chelate.

Ethyll-cyclopropyl-6, 7-difluoro-8-methoxy-4-oxo-l, 4-dihydro-3- quinoline carboxylate (lOOg) is suspended in 40% aq. hydrofluoroboric acid (1000 ml) . Temperature of the reaction mass is raised and maintained at 95°C to 100°C for 5 hrs followed by cooling to 30°C – 35°C. 400 ml DM water is added, maintained at 25°C – 30°C for 2hrs . The product is filtered, washed with DM water (500 ml) and dried at 40°C – 45°C to constant weight. The dry wt is 102.5 g (Yield: 96.6 %)

Stage – 2: Preparation of Gatifloxacin (Crude)

The boron difluoride chelate derivative (100 g) prepared as above in stage-1 is suspended in acetonitrile (800 ml) , 2-methyl piperazine (44 g, 1.5 mole equiv.) is added and mixed for 15 min to obtain a clear solution. The reaction mass is maintained at 30°C – 35°C for 12 hrs. Removed the solvent by vacuum distillation. 20% Aq. ethanol (1000 ml) is added, raised the temperature and maintained at 75°C to 80°C for 2 hrs. The reaction mass is cooled, filtered to remove insolubles. The filtrate is distilled under vacuum to remove solvent completely. Fresh ethanol (250 ml) is added and distilled under vacuum at temperature below 50°C. Fresh Ethanol (250 ml) is added to the residue and gradually cooled to -10°C to -5°C. The reaction mass is maintained at -10°C to -5°C for 1 hr and filtered. The wet cake is washed with ethanol (30 ml) and dried at 45°C – 50°C to constant weight.

The dry weight of the Gatifloxacin is 73.5 g (Yield: 65.4 %)

Stage -3: Purification of crude Gatifloxacin

Crude Gatifloxacin (80.0 g) prepared as above in stage-2 is suspended in methanol (2000 ml) , the temperature is raised and maintained at 60°C to 65°C for 20 min. to get a clear solution. The reaction mixture is filtered. The filtrate is gradually cooled and maintained at -10°C to -5°C for 2 hrs. The product is filtered, washed with methanol (50 ml) and dried at 45°C – 50°C to constant weight.

The dry weight of the pure Gatifloxacin is 56.0 g (Yield: 70.0 %)

……………………….

WO 2005047260

http://www.google.co.in/patents/WO2005047260A1?cl=en

Gatifloxacin is the international common name of l-cyclopropyl-6-fluoro-l, 4-dihydro-8-methoxy- 1- (3-methyl-l-piperazinyl) -4-oxo-3-guinolin-carboxylic acid of formula (I) , with application in medicine and known for its antibiotic activity:

 

Figure imgf000002_0001

European patent application EP-A-230295 discloses a process for obtaining gatifloxacin that consists on the reaction of compound (II) with 2-

 

Figure imgf000002_0002

In this process the gatifloxacin is isolated in the form of a hemihydrate after a laborious process of column chromatography and recrystallisation in methanol, which contributes towards making the final yield lower than 20% by weight. Moreover, in said process an undesired by-product is formed, resulting from demethylation at position 8 of the ring. European patent application EP-A-241206 discloses a process for preparing gatifloxacin, whose final steps are as follows:

 

Figure imgf000003_0001

(III) H ft N Me H DMSO

Gatifloxacin (I)

Figure imgf000003_0002

(IV) This process uses the intermediate compound (III) , which has been prepared and isolated in a separate operation, while the intermediate compound (IV) is also isolated before proceeding to its conversion into gatifloxacin by treatment with ethanol in the presence of triethylamine. The overall yield from these three steps is lower than 40%. These disadvantages — a synthesis involving several steps, low yields, and the need to isolate the intermediate products — hinder the production of gatifloxacin on an industrial scale. There is therefore a need to provide a process for preparing gatifloxacin with a good chemical yield, without the need to isolate the intermediate compounds and that substantially avoids demethylation in position 8 of the ring. The processes termed in English “one pot” are characterised in that the synthesis is carried out in the same reaction vessel, without isolating the intermediate compounds, and by means of successive addition of the reacting compounds. The authors of the present invention have discovered a simplified process for preparing gatifloxacin which does not require isolation of the intermediate compounds .

 

Example 1: Preparing gatifloxacin from compound (II) 10 g (0.0339 moles, 1 equivalent) of compound

(II) is placed in a flask, 30 ml of acetonitryl (3 volumes) is added and this is heated to a temperature of 76-80° C.

Figure imgf000004_0001

Once reflux has been attained, and being the temperature maintained, 3.28 g (0.0203 moles, 0.6 equivalents) of hexamethyldisilazane (HMDS) is added with a compensated adding funnel. Once addition is completed, the reaction is maintained with stirring for 1 hour at a temperature of 76-80° C. Once this period has elapsed, the reaction mixture is cooled to a temperature ranging between 0 and 15° C, and 5.78 g (0.0407 moles, 1.2 equivalents) of boron trifluoride ethyletherate is added while keeping the temperature below 15° C. Once addition is completed, the temperature is allowed to rise to 15- 25° C and it is kept under these conditions for approximately 2 hours. The pH of the mixture is then adjusted to an approximate value of 9 with triethylamine (approximately 2 ml) . To the resulting suspension is added a solution of 10.19 g (0.1017 moles, 3 equivalents) of 2-methylpiperazine in 28 ml of acetonitryl, while maintaining the temperature between 15 and 25° C. The resulting amber solution is kept with stirring under these conditions for approximately 3 hours . Once the reaction has been completed, the solution is distilled at low pressure until a stirrable paste is obtained. At this point 50 ml of methanol is added, the resulting suspension is raised to a temperature of 63-67° C and is kept under these conditions for approximately 5 hours . Once the reaction has been completed, the mixture is cooled to a temperature of 25-35° C in a water bath, and then at a temperature of 0-5° C in a water/ice bath for a further 1 hour. The resulting precipitate is filtered, washed with cold methanol (2 x 10 ml) and dried at 40° C in a vacuum oven to constant weight. 10.70 g of crude gatifloxacin is obtained, having a water content of 2.95% by weight. The yield of the process is 81.8%.

The crude product is crystallised in methanol by dissolving 20 g of crude gatifloxacin in 1 1 of methanol (50 volumes) at a temperature of 63-67° C. Once all the product has been dissolved, the solution is left to cool to a temperature of 30-40° C, and then to a temperature of 0-5° C in a water/ice bath, maintaining it under these conditions for 1 hour. The resulting suspension is filtered and the solid retained is washed with 20 ml (1 volume) of cold methanol. The solid obtained is dried at 40° C in a vacuum oven to provide 18.65 g of gatifloxacin with a water content of 2.36% by weight.

The overall yield from the compound (II) is 77.7%, with a purity exceeding 99.8% as determined by HPLC chromatography. The content of by-product resulting from demethylation in position 8 of the ring is lower than 0.1% as determined by HPLC chromatography.

Gatifloxacin ball-and-stick.png
Systematic (IUPAC) name
1-cyclopropyl-6-fluoro- 8-methoxy-7-(3-methylpiperazin-1-yl)- 4-oxo-quinoline-3-carboxylic acid
Clinical data
Trade names Zymar
AHFS/Drugs.com monograph
MedlinePlus a605012
  • ℞ (Prescription only)
Oral (discontinued),
Intravenous(discontinued)
ophthalmic
Pharmacokinetic data
Protein binding 20%
Half-life 7 to 14 hours
Identifiers
112811-59-3 Yes
J01MA16 S01AE06
PubChem CID: 5379
DrugBank DB01044 Yes
ChemSpider 5186 Yes
UNII 81485Y3A9A Yes
KEGG D08011 Yes
ChEBI CHEBI:5280 Yes
ChEMBL CHEMBL31 Yes
NIAID ChemDB 044913
Chemical data
Formula C19H22FN3O4
375.394 g/mol

PAPER

Abstract Image

An improved process to obtain gatifloxacin (1) through use of boron chelate intermediates has been developed. The methodology involves an initial activation step which accelerates the formation of the first chelate under low-temperature conditions and prevents demethylation of the starting material. To increase the overall yield and to avoid the isolation and manipulation of the resulting intermediates, the process has been designed to be carried out in one pot. As a result, we present here an easy, scaleable and substantially impurity-free process to obtain gatifloxacin (1) in high yield.

A High-Throughput Impurity-Free Process for Gatifloxacin

Department of Research & Development, Química Sintética S.A., c/ Dulcinea s/n, 28805 Alcalá de Henares, and Department of Organic Chemistry, University of Alcalá, 28871 Madrid, Alcalá de Henares, Spain
Org. Process Res. Dev., 2008, 12 (5), pp 900–903
DOI: 10.1021/op800042a
gatifloxacin (1) as white crystals. Yield 32.3 kg, (93%); purity by HPLC 99.87%; Assay by HPLC 100.8%; mp 167−168 °C(18) (Lit. (J. Med. Chem. 1995, 38, 4478)159−162 °C).
18

DSC analysis showed two endothermic peaks at 166.2 °C (T onset = 164.3 °C) and 190.0 °C (T onset = 188.2 °C) and an exothermic one at 168.1 °C. The shape of this DSC curve is characteristic of a monotropic transition between crystalline forms

Water content by Karl Fischer 3.0%(19) MS m/z 376 (M+ + H);
19

Although there are several hydrates described for gatifloxacin such as, among others, the hemimydrate, sesquihydrate, and pentahydrate(Raghavan, K. S.; Ranadive, S. A.;Gougoutas, J. Z.; Dimarco, J. D.; Parker, W. L.; Dovich, M.; Neuman, A.Gatifloxacin pentahydrate. WO 2002/22126 A1, 2002) , the Gatifloxacin obtained by the present procedure does not seem to form a stoichometric hydrate, but instead it retains moisture.

Thus, the product is usually obtained with a Karl-Fischer value below 1% after drying, but it can absorb moisture until a final content of about 3%. This water content can vary between 2.0% and 3.5%, depending on the relative humidity of the environment. DSC analysis revealed a broad endothermic signal with minimum at 76 °C, while TGA analysis showed that the product loses all the water below 80 °C.

No loss of weight is registered when the product melts, and the weight is constant until the decomposition of the material at about 200 °C. On the basis of these results, it can be said that the water content of the gatifloxacin obtained by the present process is retained moisture instead of water belonging to the lattice. The shape of the derivative of the weight curve at the beginning of the analysis shows that the sample has already lost part of the moisture when the register starts. This is probably due to the sample starting to lose weight when makes contact with the dry atmosphere of the TGA oven that could explain the different values obtained for water content of the analyzed sample by TGA (1.90%) and Karl-Fischer (2.64%) methods.

 1H NMR (DMSO-d6) δ 0.97 (d, J = 6.1 Hz, 3H), 1.04 (m, 2H), 1.15 (m, 2H), 2.75−2.94 (m, 4H) 3.14 (m, 1H), 3.30 (m, 2H), 3.74 (s, 3H), 4.15 (m, 1H), 7.70 (d, JH−F = 12.2 Hz, 1H), 8.67 (s, 1H). 
13C NMR (DMSO-d6) δ 8.40, 8.42, 18.66, 40.28, 45.46, 50.17, 50.29 (d, JC−F = 3.44 Hz), 57.36 (d, JC−F = 3.74 Hz), 62.15, 106.0 (d, JC−F = 22.7 Hz), 106.04, 120.05 (d, JC−F = 8.6 Hz), 133.6 (d, JC−F = 1.1 Hz), 138.9 (d, JC−F = 11.9 Hz), 145.2 (d, JC−F = 5.87 Hz), 149.88, 155.06 (d, JC−F = 249.2 Hz), 165.56, 175.56 (d, JC−F = 3.3 Hz).
 19F NMR (DMSO-d6) δ −120.4 (d, J = 12.2 Hz).
Anal. Calcd for C19H22N3O4F + 3.0% H2O; C, 58.95; H, 6.07; N, 10.85. Found: C, 58.90; H, 5.82; N, 10.90.

Side-effects and removal from the market

Canadian study published in the New England Journal of Medicine in March 2006 claims Tequin can have significant side effectsincluding dysglycemia.[2] An editorial by Dr. Jerry Gurwitz in the same issue called for the Food and Drug Administration (FDA) to consider giving Tequin a black box warning.[3] This editorial followed distribution of a letter dated February 15 by Bristol-Myers Squibb to health care providers indicating action taken with the FDA to strengthen warnings for the medication.[4] Subsequently it was reported on May 1, 2006 that Bristol-Myers Squibb would stop manufacture of Tequin, end sales of the drug after existing stockpiles were exhausted, and return all rights to Kyorin.[5]

Union Health and Family Welfare Ministry of India on 18 March 2011 banned the manufacture, sale and distribution of Gatifloxacin as it caused certain adverse side effects[6]

Contraindications

Diabetes[7]

Availability

Gatifloxacin is currently available only in the US and Canada as an ophthalmic solution.

In China it is sold in tablet as well as in eye drop formulations.

Ophthalmic anti-infectives are generally well tolerated. The concentration of the drug observed following oral administration of 400 mg gatifloxacin systemically is approximately 800 times higher than that of the 0.5% Gatifloxacin eye drop. Given as an eye drop, Gatifloxacin Ophthalmic Solution 0.3% & 0.5% cause very low systemic exposures. Therefore, the systemic exposures resulting from the gatifloxacin ophthalmic solution are not likely to pose any risk for systemic toxicities.

  • The reaction of 1-bromo-2,4,5-trifluoro-3-methoxybenzene (I) with CuCN and N-methyl-2-pyrrolidone at 150 C gives 2,4,5-trifluoro-3-methoxybenzonitrile (II), which by treatment with concentrated H2SO4 yields the benzamide (III) The hydrolysis of (III) with H2SO4 -. water at 110 C affords 2,4,5-trifluoro-2-methoxybenzoic acid (IV), which by reaction with SOCl2 is converted into the acyl chloride (V). The condensation of (V) with diethyl malonate by means of magnesium ethoxide in toluene affords diethyl 2- (2,4,5-trifluoro-3-methoxybenzoyl) malonate (VI), which by treatment with p-toluenesulfonic acid in refluxing water gives ethyl 2- (2,4,5-trifluoro-3-methoxybenzoyl) acetate (VII). The condensation of (VII) with triethyl orthoformate in refluxing acetic anhydride yields 3-ethoxy -2- (2,4,5-trifluoro-3-methoxybenzoyl) acrylic acid ethyl ester (VIII), which is treated with cyclopropylamine (IX) to afford the corresponding cyclopropylamino derivative (X). The cyclization of (X) by means of NaF in refluxing DMF gives 1-cyclopropyl-6,7-difluoro-8-methoxy-4-oxo-1,4-dihydroquinoline-3-carboxylic acid ethyl ester (XI), which is hydrolyzed with H2SO4 in acetic acid to yield the corresponding free acid (XII). Finally, this compound is condensed with 2-methylpiperazine (XIII) in hot DMSO.

 

Gatifloxacin
Title: Gatifloxacin
CAS Registry Number: 112811-59-3
CAS Name: 1-Cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-(3-methyl-1-piperazinyl)-4-oxo-3-quinolinecarboxylic acid
Trademarks: Tequin (BMS); Zymar (Allergan)
Molecular Formula: C19H22FN3O4
Molecular Weight: 375.39
Percent Composition: C 60.79%, H 5.91%, F 5.06%, N 11.19%, O 17.05%
Literature References: Fluorinated quinolone antibacterial. Prepn: K. Masuzawa et al., EP 230295eidem, US 4980470 (1987, 1990 both to Kyorin); J. P. Sanchez et al., J. Med. Chem. 38, 4478 (1995); of the sesquihydrate: T. Matsumoto et al., US5880283 (1999 to Kyorin). In vitro antibacterial activity: A. Bauernfeind, J. Antimicrob. Chemother. 40, 639 (1997); H. Fukuda et al., Antimicrob. Agents Chemother. 42, 1917 (1998). Clinical pharmacokinetics: M. Nakashima et al., ibid. 39, 2635 (1995). Clinical study in urinary tract infection: H. Nito, 10th Mediterranean Congr. Chemother. 1996, 327; in respiratory tract infection: S. Sethi, Expert Opin. Pharmacother. 4, 1847 (2003).
Properties: Pale yellow prisms from methanol as hemihydrate, mp 162°.
Melting point: mp 162°
 
Derivative Type: Sesquihydrate
CAS Registry Number: 180200-66-2
Manufacturers’ Codes: AM-1155
Molecular Formula: C19H22FN3O4.1½H2O
Molecular Weight: 384.40
Percent Composition: C 59.37%, H 6.03%, F 4.94%, N 10.93%, O 18.73%
Therap-Cat: Antibacterial.
Keywords: Antibacterial (Synthetic); Quinolones and Analogs

References

  1.  Burka JM, Bower KS, Vanroekel RC, Stutzman RD, Kuzmowych CP, Howard RS (July 2005). “The effect of fourth-generation fluoroquinolones gatifloxacin and moxifloxacin on epithelial healing following photorefractive keratectomy”Am. J. Ophthalmol. 140 (1): 83–7. doi:10.1016/j.ajo.2005.02.037.PMID 15953577.
  2.  Park-Wyllie, Laura Y.; David N. Juurlink; Alexander Kopp; Baiju R. Shah; Therese A. Stukel; Carmine Stumpo; Linda Dresser; Donald E. Low; Muhammad M. Mamdani (March 2006).“Outpatient Gatifloxacin Therapy and Dysglycemia in Older Adults”The New England Journal of Medicine 354 (13): 1352–1361. doi:10.1056/NEJMoa055191PMID 16510739. Retrieved 2006-05-01. Note: publication date 30 March; available on-line 1 March
  3.  Gurwitz, Jerry H. (March 2006). “Serious Adverse Drug Effects — Seeing the Trees through the Forest”The New England Journal of Medicine 354 (13): 1413–1415.doi:10.1056/NEJMe068051PMID 16510740. Retrieved2006-05-01.
  4.  Lewis-Hall, Freda (February 15, 2006). “Dear Healthcare Provider:” (PDF). Bristol-Myers Squibb. Retrieved May 1, 2006.
  5.  Schmid, Randolph E. (May 1, 2006). “Drug Company Taking Tequin Off Market”Associated Press. Archived from the original on November 25, 2007. Retrieved 2006-05-01.[dead link]
  6.  “Two drugs banned”The Hindu (Chennai, India). 19 March 2011.
  7.  Peggy Peck (2 May 2006). “Bristol-Myers Squibb Hangs No Sale Sign on Tequin”. Med Page Today. Retrieved 24 February2009.

 

EP0610958A2 * 20 Jul 1989 17 Aug 1994 Ube Industries, Ltd. Intermediates in the preparation of 4-oxoquinoline-3-carboxylic acid derivatives
ES2077490A1 * Title not available
Citing Patent Filing date Publication date Applicant Title
WO2008126384A1 31 Mar 2008 23 Oct 2008 Daiichi Sankyo Co Ltd Method for producing quinolone carboxylic acid derivative
CN101659654B 28 Aug 2008 6 Nov 2013 四川科伦药物研究有限公司 2-Methylpiperazine fluoroquinolone compound and preparation method and application thereof
CN102351843A * 18 Aug 2011 15 Feb 2012 张家口市格瑞高新技术有限公司 Synthesis method of 2-methyl piperazine lomefloxacin
EP1832587A1 * 2 Mar 2007 12 Sep 2007 Quimica Sintetica, S.A. Method for preparing moxifloxacin and moxifloxacin hydrochloride
US7365201 2 Mar 2006 29 Apr 2008 Apotex Pharmachem Inc. Process for the preparation of the boron difluoride chelate of quinolone-3-carboxylic acid
US7875722 30 Sep 2009 25 Jan 2011 Daiichi Sankyo Company, Limited Method for producing quinolone carboxylic acid derivative
EP0464823A1 * Jul 4, 1991 Jan 8, 1992 Kyorin Pharmaceutical Co., Ltd. (6,7-Substituted-8-alkoxy-1-cyclopropyl-1,4-dihydro-4-oxo-3-quinolinecarboxylic acid-O3,O4)bis(acyloxy-O)borates and the salts thereof, and methods for their manufacture
US4997943 * Mar 31, 1987 Mar 5, 1991 Sankyo Company Limited Quinoline-3-carboxylic acid derivatives
Citing Patent Filing date Publication date Applicant Title
CN101659654B Aug 28, 2008 Nov 6, 2013 四川科伦药物研究有限公司 2-Methylpiperazine fluoroquinolone compound and preparation method and application thereof
CN102351843A * Aug 18, 2011 Feb 15, 2012 张家口市格瑞高新技术有限公司 Synthesis method of 2-methyl piperazine lomefloxacin
* Cited by examiner

 

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  1. Amritsar – Wikipedia, the free encyclopedia

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    Amritsar is one of the largest cities of the Punjab state in India. The city origin lies in the village of Tung, and was named after the lake founded by the fourth Sikh  …

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    Tandoori chicken at Surjit Food Plaza. amritsar

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    The Jallianwalla Bagh in 1919, months after the massacre

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    Golden Temple – Harmandir Sahib: Free food for everyone

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The rapid synthesis of oxazolines and their heterogeneous oxidation to oxazoles under flow conditions

 SYNTHESIS  Comments Off on The rapid synthesis of oxazolines and their heterogeneous oxidation to oxazoles under flow conditions
Jun 162015
 
C4OB02105C GA
The rapid synthesis of oxazolines and their heterogeneous oxidation to oxazoles under flow conditions Steffen Glöckner, Duc N. Tran, Richard J. Ingham, Sabine Fenner, Zoe E. Wilson, Claudio Battilocchio and Steven V. Ley DOI: 10.1039/C4OB02105C, Paper From themed collection Recent Advances in Flow Synthesis and Continuous Processing

The rapid synthesis of oxazolines and their heterogeneous oxidation to oxazoles under flow conditions

*Corresponding authors
aDepartment of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
E-mail: svl1000@cam.ac.uk Web: http://www.leygroup.ch.cam.ac.uk/
Org. Biomol. Chem., 2015,13, 207-214

DOI: 10.1039/C4OB02105C

A rapid flow synthesis of oxazolines and their oxidation to the corresponding oxazoles is reported. The oxazolines are prepared at room temperature in a stereospecific manner, with inversion of stereochemistry, from β-hydroxy amides using Deoxo-Fluor®. The corresponding oxazoles can then be obtained via a packed reactor containing commercial manganese dioxide
image file: c4ob02105c-f1.tif
Fig. 1 Oxazoline- and oxazole-containing natural products.
image file: c4ob02105c-s1.tif
Scheme 1 Optimised conditions for the flow synthesis of oxazolines.
image file: c4ob02105c-s2.tif
Scheme 2 Microchip reaction for the preparation of oxazolines.
image file: c4ob02105c-s3.tif
Scheme 3 Platform set up for the scale up experiment.
image file: c4ob02105c-s4.tif
Scheme 4 Flow oxidation of aryl-oxazolines using activated MnO2.
image file: c4ob02105c-s5.tif
Scheme 5 Flow oxidation of 2-alkyl-oxazolines using amorphous MnO2a[thin space (1/6-em)]Deprotection was observed.
image file: c4ob02105c-s6.tif
Scheme 6 Automated oxidation of oxazolines using a Raspberry Pi® computer and a multiple position valve.
Table 1 Flow cyclodehydration of β-hydroxy amides using Deoxo-Fluor®
Entrya Substrate Product Isolated yieldb
a Reactions were run on a 2 mmol scale. b Compounds were isolated without purification. c The crude material was passed through a plug of calcium carbonate/silica in place of an aqueous work up. d Total flow rate = 10 mL min−1 with 2.6 eq. of Deoxo-Fluor®.
1 image file: c4ob02105c-u1.tif 1a image file: c4ob02105c-u2.tif 2a 98%
2 image file: c4ob02105c-u3.tif 1b image file: c4ob02105c-u4.tif 2b 98%
3 image file: c4ob02105c-u5.tif 1c image file: c4ob02105c-u6.tif 2c 79%c
4 image file: c4ob02105c-u7.tif 1d image file: c4ob02105c-u8.tif 2d 98%
5 image file: c4ob02105c-u9.tif 1e image file: c4ob02105c-u10.tif 2e 99%
6 image file: c4ob02105c-u11.tif 1f image file: c4ob02105c-u12.tif 2f 95%
7 image file: c4ob02105c-u13.tif 1g image file: c4ob02105c-u14.tif 2g 98%
8 image file: c4ob02105c-u15.tif 1h image file: c4ob02105c-u16.tif 2h 92%
9 image file: c4ob02105c-u17.tif 1i image file: c4ob02105c-u18.tif 2i 95%
10 image file: c4ob02105c-u19.tif 1j image file: c4ob02105c-u20.tif 2j 60%
11 image file: c4ob02105c-u21.tif 1k image file: c4ob02105c-u22.tif 2k 85%d
12 image file: c4ob02105c-u23.tif 1l image file: c4ob02105c-u24.tif 2l 92%d

………………………………………     image file: c4ob02105c-u2.tif2a

General protocol for the preparation of oxazoline in flow

A solution of Deoxo-Fluor® (1 mL, 50% in toluene) in CH2Cl2 (7.0 mL) and a solution of β-hydroxy amide (2 mmol) in CH2Cl2 (8 mL) were combined at a T-piece (each stream run at 3.0 mL min−1) and reacted at rt in a 10 mL PFA reactor coil. The combined stream was then directed to an aqueous quenching stream (9 mL min−1) and the solution directed to a liquid/liquid separator.22

(4S,5S)-5-Methyl-2-phenyl-4,5-dihydro-oxazole-4-carboxylic acid methyl ester (2a).
image file: c4ob02105c-u2.tif2a
 1H-NMR (600 MHz, CDCl3) δ = 7.98–7.96 (m, 2H), 7.49–7.46 (m, 1H), 7.40–7.38 (m, 2H), 5.05 (dq, 1H, J= 10.2, 6.4 Hz), 4.97 (d, 1H, J = 10.2 Hz), 3.76 (s, 3H), 1.37 (d, 3H, J = 6.5 Hz); 
13C-NMR (151 MHz, CDCl3) δ = 170.5, 166.2, 131.9, 128.6, 128.4, 127.3, 77.7, 71.8, 52.2, 16.3; 
HR-MS (ESI+) for C12H14NO3+ [M + H]+ calc.: 220.0974, found: 220.0981; 
FT-IR neat, [small nu, Greek, tilde] (cm−1) = 2953, 1736, 1645, 1603, 1580, 1496, 1450, 1384, 1349, 1244, 1197, 1174, 1067, 1045, 1001, 973, 934, 904, 886, 851, 778, 695; 
specific rotation: [α]24.1D = +58.58° cm3 g−1 dm−1 (c = 8.5 in ethanol). Lit.: [α]20D = +69.4° cm3 g−1 dm−1 (c = 8.5 in EtOH).39
39…………H. Aït-Haddou, O. Hoarau, D. Cramailére, F. Pezet, J.-C. Daran and G. G. A. Balavoine, Chem. – Eur. J., 2004, 10, 699–707
Portrait of zw261

Dr Zoe Wilson

Post Doctoral Research Associate in the group of Professor Steven V. Ley working on the synthesis of complex natural products and synthetic methodology.

College Lecturer and Fellow at Murray Edwards College.

Research Group

Telephone number

01223 336698 (shared)

Email address

zw261@cam.ac.uk

College

Murray Edwards College

Email: zw261@cam.ac.uk    LinkedIn Profile

Zoe grew up on a farm in the small town of Warkworth, New Zealand. After completing her studies she moved to Auckland, New Zealand to attend the University of Auckland where she completed a Bachelor of Science in Medicinal Chemistry then a BSc (Hons) in Medicinal Chemistry under the supervision of Professor Margaret Brimble, working on the synthesis of anti-Helicobacter pylori compounds. She was then funded by a University of Auckland scholarship to carry out Ph.D. research with Professor Brimble into the synthesis of the extremophile natural product berkelic acid. Upon completion of her Ph.D. she was awarded a Newton International Fellowship from the Royal Society to move to the United Kingdom and join the research group of Professor Steven V. Ley in the Department of Chemistry, University of Cambridge. Upon completion of the two year Newton Fellowship, she was then employed as a Post-Doctoral Research Associate to continue working in the Ley group. While in Cambridge, she has been working on the total synthesis of the complex natural products azadirachtin and plantazolicins A and B, in the process developing novel chemistry. In October 2013 Zoe was appointed as a College Lecturer and Fellow at Murray Edwards College.

Teaching

Graduate Lecture Series – Reduction in Organic Chemistry (2 lectures) (2014, 2013)

Senior demonstrator Chemistry II laboratories (2014/2015)

Senior demonstrator Chemistry IB laboratories (2012/2013, 2013/2014)

College Lecturer at Murray Edwards College

 

Publications

 

12.          Zoe E. Wilson, Sabine Fenner and Steven V. Ley, “Total syntheses of linear poly-thiazole/oxazole plantazolicin A and its biosynthetic precursor plantazolicin B”, Angew. Chem. Int. Ed.201554, 1284 – 1288 DOI: 10.1002/anie.201410063R1

11.          Steffen Glöckner, Duc N. Tran, Richard J. Ingham, Sabine Fenner, Zoe E. Wilson, Claudio Battilocchio and Steven V. Ley, “The rapid synthesis of oxazolines and their heterogeneous oxidation to oxazoles under flow conditions”, Org. Biomol. Chem.,201513, 207–214, DOI: 10.1039/c4ob02105c

10.          Michael C. McLeod, Zoe E. Wilson and Margaret A. Brimble, “Formal synthesis of berkelic acid: a lesson in α-alkylation chemistry”, J. Org. Chem., 201277, 1, 400–416, DOI: 10.1021/jo201988m

9.            Michael C. McLeod, Margaret A. Brimble, Dominea C. K. Rathwell, Zoe E. Wilsonand Tsz-Ying Yuen, “Synthetic approaches to [5,6]-benzannulated spiroketal natural products”, Pure Appl. Chem.201284, 6, 1379-1390, DOI: 10.1351/PAC-CON-11-08-06

8.            Michael C. McLeod, Zoe E. Wilson and Margaret A. Brimble, “An enantioselective formal synthesis of berkelic acid”, Org. Lett.201113, 19, 5382 – 5385, DOI: 10.1021/ol202265g

7.            Zoe E. Wilson, Jonathan G. Hubert, Margaret A. Brimble, “A flexible approach to 6,5-benzannulated spiroketals”, Eur. J. Org. Chem.2011, 3938-3945, DOI: 10.1002/ejoc.201100345

6.            Jonathan Sperry, Yen-Cheng (William) Liu, Zoe E. Wilson, Jonathan G. Hubert, Margaret A. Brimble, “Synthesis of benzannulated spiroketals using an oxidative radical cyclization”, Synthesis20119, 1383-1398, DOI: 10.1055/s-003001259981

5.            Jonathan Sperry, Zoe E. Wilson, Dominea C. K. Rathwell and Margaret A. Brimble, “Isolation, biological activity and synthesis of benzannulated spiroketal natural products”, Nat. Prod. Rep.201027, 1117-1137, DOI: 10.1039/b911514p

4.            Zoe E. Wilson and Margaret A. Brimble, “A flexible asymmetric synthesis of the tetracyclic core of berkelic acid using a novel Horner-Wadsworth-Emmons/oxa-Michael cascade”, Org. Biomol. Chem., 20108, 1284-1286, DOI: 10.1039/B927219B

3.            Zoe E. Wilson and Margaret A. Brimble, “Molecules derived from the extremes of life”, Nat. Prod. Rep.200926, 44–71, DOI: 10.1039/b800164m

Featured as an Instant insight article in Chemical Biology (“Life at the extremes”,Chemical Biology20083, B95) and featured on the cover of the issue (Nat. Prod. Rep.,200926, 1-2, DOI: 10.1039/B821737H)

2.            Fiona J. Radcliff, John D. Fraser, Zoe E. Wilson, Amanda M. Heapy, James E. Robinson, Christina J. Bryant, Christopher L. Flowers, and Margaret A. Brimble, “Anti-Helicobacter pylori activity of derivatives of the phthalide-containing antibacterial agents spirolaxine methyl ether, CJ-12,954, CJ-13,013, CJ-13,102, CJ-13,104, CJ-13,108 and CJ-13,015”, Bioorg. Med. Chem.200816, 6179–6185, DOI: 10.1016/j.bmc.2008.04.037

1.            Zoe E. Wilson, Amanda M. Heapy and Margaret A. Brimble, “Synthesis of indole analogues of the anti-Helicobacter pylori compounds CJ-13,015, CJ-13,102, CJ-13,104 and CJ-13,108”, Tetrahedron200763, 5379–5385, DOI: 10.1016/j.tet.2007.04.067

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Flow Synthesis of Fluorinated α-Amino Acids

 SYNTHESIS  Comments Off on Flow Synthesis of Fluorinated α-Amino Acids
Jun 102015
 

thumbnail image: Flow Synthesis of Fluorinated α-Amino Acids

Dr. Susan Wilkinson, Deputy Editor for the European Journal of Organic Chemistry, talks to Professor Beate Koksch, Freie Universität Berlin, Germany, and Professor Peter Seeberger, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany, about their article on the synthesis of fluorinated amino acids recently published in the European Journal of Organic Chemistry.

Flow Synthesis of Fluorinated α-Amino Acids

Dr. Wilkinson, European Journal of Organic Chemistry, talks to Professors Koksch and Seeberger about fluorinated amino acids

Read more

http://www.chemistryviews.org/details/ezine/7956531/Flow_Synthesis_of_Fluorinated_-Amino_Acids.html

 Professor Beate Koksch, Freie Universität Berlin, Germany,

.Prof. Dr. Beate Koksch

Institute of Chemistry and Biochemistry – Organic Chemistry 
Freie Universität Berlin 
Takustr. 3
14195 Berlin

Working Group: AG Koksch

Space: 32.18

Tel .: + 49-30-838-55344, Fax -55 644

Secretariat:
Tel .: + 49-30-838-55880
(woman Skowronski, room 32.17)

Email: Beate.Koksch (At)fu-berlin.de

.

Koksch ++49 – 30 – 838 55344

 e-mail

 homepage (http://userpage.chemie.fu-berlin.de/~akkoksch/)

Free University of Berlin
Takustr. 3
14195 Berlin
Germany

Nominated by

  • German Research Foundation (DFG)
  • AcademiaNet member since 13.03.2015

Employed by

  • Freie Universität Berlin

Academic Discipline/Fields

  • Natural sciences/ Engineering/ Agricultural sciences

Field

Chemistry

Area of specialisation

Organic and Natural Product Chemistry

Research interests

  • folding mechanisms occuring in neurodegenerative diseases
  • developing new multivalent scaffolds
  • investigating the impact of fluorine on amino acids, peptides and proteins

Distinctions and Awards

  • Georg Thieme publisher’s award, 2002Lessing medal in gold, 1986

………………………………………………..

Professor Peter Seeberger, Max Planck Institute of Colloids and Interfaces, Potsdam, Germany

Since 2011, Professor Peter H. Seeberger, Max Planck Institute of Colloids and Interfaces in Potsdam, Germany, is Editor-in-Chief of the Beilstein Journal of Organic Chemistry.

Editor-in-Chief of the Beilstein Journal of Organic Chemistry is Professor Peter H. Seeberger, Max Planck Institute of Colloids and Interfaces in Potsdam, Germany, who is supported by a distinguished board of associate editors, each of whom is responsible for a particular subject area within the journal’s scope. Over 40 scientists from all over the world, including several Nobel Prize laureates, support the Beilstein Journal of Organic Chemistry as Advisory Board members.

Prof. Dr. Peter H. Seeberger

Director
Phone:+49 30 838-59301Fax:+49 30 838-59302

German researchers develop cheap and high-yield process to manufacture anti-malaria drug

Jan 18, 2012

Researchers at the Max Planck Institute of Colloids and Interfaces in Potsdam and the Freie Universität Berlin have developed a very simple process for the synthesis of artemisinin – the best anti-malaria drug – more economically and in sufficient volumes for all patients. This means that it will be possible to provide medication for the 225 million malaria patients in developing countries at an affordable price.

An Anopheles female mosquito that transmits malariaAn Anopheles female mosquito that transmits malaria(© picture alliance/dpa Fotografia)Over one million people die of malaria each year because they do not have access to effective drugs.Millions, especially in the developing world, cannot afford the combination drug preparation, which consists mainly of artemisinin.

Moreover, the price for the medication varies, as this substance is isolated from sweet wormwood (Artemisia annua) which grows mainly in China and Vietnam, and varies seasonally in its availability.

Pharmaceutical companies could only obtain the drug from plants up to now. The chemists use a waste product from current artemisinin production as their starting substance. This substance can also be produced biotechnologically in yeast, which the scientists convert into the active ingredient using a simple yet very ingenious method.

This may be about to change. Peter H. Seeberger, Director at the Max Planck Institute of Colloids and Interfaces in Potsdam and Professor of Chemistry at the Freie Universität Berlin and his colleague François Lévesque have discovered a very simple way of synthesising the artemisinin molecule, which is known as an anti-malaria drug from traditional Chinese medicine and has an extremely complex chemical structure. “The production of the drug is therefore no longer dependent on obtaining the active ingredient from plants,” says Peter Seeberger.

Synthesis from a by-product of artemisinin production

As a starting point, the chemists use artemisinic acid – a substance produced as a hitherto unused by-product from the isolation of artemisinin from sweet wormwood, which is produced in volumes ten times greater than the active ingredient itself. Moreover, artemisinic acid can easily be produced in genetically modified yeast as it has a much simpler structure. “We convert the artemisinic acid into artemisinin in a single step,” says Peter Seeberger. “And we have developed a simple apparatus for this process, which enables the production of large volumes of the substance under very controlled conditions.”

The effect of the molecule, which not only targets malaria but possibly also other infections and even breast cancer, is due to, among other things, a very reactive chemical group formed by two neighbouring oxygen atoms – which chemists refer to as an endoperoxide. Peter Seeberger and François Lévesque use photochemistry to incorporate this structural element into the artemisinic acid. Ultraviolet light converts oxygen into a form that can react with molecules to form peroxides.

800 photoreactors should suffice to cover the global requirement for artemisinin

Dr. Peter H. Seeberger, Director at the Max Planck Institute of Colloids and Interfaces in Potsdam and Professor of Chemistry at the Freie Universität BerlinDr. Peter H. Seeberger, Director at the Max Planck Institute of Colloids and Interfaces in Potsdam and Professor of Chemistry at the Freie Universität Berlin(© dpa)“Photochemistry is a simple and cost-effective method. However, the pharmaceutical industry has not used it to date because it was so difficult to control and implement on a large scale,” explains Peter Seeberger.

“The fact that we do not carry out the synthesis as a one-pot reaction in a single vessel, but in a continuous-flow reactor enables us to define the reaction conditions down to the last detail,” explains Peter Seeberger.

After just four and a half minutes a solution flows out of the tube, in which 40 percent of the artemisinic acid has become artemisinin. “We assume that 800 of our simple photoreactors would suffice to cover the global requirement for artemisinin,” says Peter Seeberger. And it could all happen very quickly. Peter Seeberger estimates that the innovative synthesis process could be ready for technical use in a matter of six months. This would alleviate the global shortage of artemisinin and exert considerable downward pressure on the price of the associated drugs…….see        http://www.india.diplo.de/Vertretung/indien/en/__pr/Edu__Science__News/Malaria__drug.html

 

Max Planck Institute for Colloids and Interfaces

Peter Seeberger2

 

Peter Seeberger

Department of Biomolecular Systems
Max Plank Institute for Colloids and Interfaces
(Potsdam, Germany)
peter.seeberger@mpikg.mpg.de

http://www.peter-seeberger.de/

The core interests our research program currently address the following areas:

Automated oligosaccharide synthesis

  • Rapid access to monosaccharide by de-novo synthesis
  • New protecting groups
  • New Glycosylating Agents
  • New linkers for solid phase carbohydrate synthesis
  • Assembly of complex structures (in particular N-Glycans, O-Glycans)
  • Optimization of steps followingthe assembly, like deprotection, modification and conjugation

Total Synthesis of Biologically Important Oligosaccharides

  • Tumor-associated antigens
  • HIV-related oligosaccharides
  • Bacterial cell-surface antigens
  • N-linked glycoproteins

Chemical Synthesis and Biochemistry of Proteoglycans

  • Modular synthesis of heparin/heparan sulfates
  • Creation of heparin microarray
  • Optimization of the building blocks synthesis
  • Study of the SAR (structure-activity relationship) and the interactions between Proteoglycans and proteins
  • Automated synthesis of heparin fragments

Total Synthesis and Biological Activity of Glycosylphosphatidylinositols (GPIs)

  • Total syntheses of GPIs
  • Development of a synthetic GPI malarial vaccine
  • Elucidation of the biosynthesis of GPI
  • Immunological response to synthetic GPIs

Development of Cabohydrate-based Vaccines

  • A fully synthetic malaria vaccine
  • Leishmania vaccine
  • Synthetic HIV vaccine
  • Synthetic TB vaccine

Microreactors for Organic Synthesis

  • (Automated) Synthesis in continuous flow Microreactors
  • Photochemistry in Microflow reactors
  • Catalysis in Microreactors

Carbohydrate Microarrays

De novo synthesis

Nanoparticules and Colloidal Polymers

  • Quantum dots
  • Supramolecular dendrimers
  • Emulsion polymerization of nanoparticules

http://www.theguardian.com/technology/2012/feb/05/malaria-drug-synthesis-peter-seeberger

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Potsdam, Germany

  1. Potsdam – Wikipedia, the free encyclopedia

    en.wikipedia.org/wiki/Potsdam

    Potsdam (German pronunciation: [ˈpɔtsdam] ( listen)), is the capital city of the German federal state of Brandenburg. It directly borders the German capital Berlin  …

Map of potsdam germany

 

 

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Synthesis of Phospholipopeptides

 SYNTHESIS  Comments Off on Synthesis of Phospholipopeptides
Jun 102015
 

thumbnail image: Synthesis of Phospholipopeptides

Synthesis of Phospholipopeptides

A crosslinking approach for the synthesis of phospholipopeptides under mild conditions

Read more

http://www.chemistryviews.org/details/news/7984971/Synthesis_of_Phospholipopeptides.html

Bonan Li and Jun F. Liang, Stevens Institute of Technology, Hoboken, NJ, USA, report an approach to synthesize phospholipopeptides. They use a crosslinker with a thiol-reactive maleimide and an amine-reactive N-hydroxysuccinimide ester (pictured). Hence, the molecule is able to link the thiol group of the amino acid cystein in the peptide and the amine group of the phospholipid (phosphatidylamine).

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NMR Structure Elucidation of Small Organic Molecules and Natural Products: Choosing ADEQUATE vs HMBC

 Uncategorized  Comments Off on NMR Structure Elucidation of Small Organic Molecules and Natural Products: Choosing ADEQUATE vs HMBC
Jun 092015
 
Abstract Image

Long-range heteronuclear shift correlation methods have served as the cornerstone of modern structure elucidation protocols for several decades. The 1H–13C HMBC experiment provides a versatile and relatively sensitive means of establishing predominantly 3JCHconnectivity with the occasional 2JCH or 4JCH correlation being observed. The two-bond and four-bond outliers must be identified specifically to avoid spectral and/or structural misassignment. Despite the versatility and extensive applications of the HMBC experiment, it can still fail to elucidate structures of molecules that are highly proton-deficient, e.g., those that fall under the so-called “Crews rule”. In such cases, recourse to the ADEQUATE experiments should be considered. Thus, a study was undertaken to facilitate better investigator understanding of situations where it might be beneficial to apply 1,1- or 1,n-ADEQUATE to proton-rich or proton-deficient molecules. Equipped with a better understanding of when a given experiment might be more likely to provide the necessary correlation data, investigators can make better decisions on when it might be advisible to employ one experiment over the other. Strychnine (1) and cervinomycin A2 (2) were employed as model compounds to represent proton-rich and proton-deficient classes of molecules, respectively. DFT methods were employed to calculate the relevant nJCHheteronuclear proton–carbon and nJCC homonuclear carbon–carbon coupling constants for this study.

NMR Structure Elucidation of Small Organic Molecules and Natural Products: Choosing ADEQUATE vs HMBC

† Discovery and Preclinical Sciences, Process and Analytical Chemistry, NMR Structure Elucidation, Merck Research Laboratories, Kenilworth, New Jersey 07033, United States
‡ Discovery and Preclinical Sciences, Process and Analytical Chemistry, NMR Structure Elucidation, Merck Research Laboratories, Rahway, New Jersey 07065, United States
J. Nat. Prod., 2014, 77 (8), pp 1942–1947
DOI: 10.1021/np500445s
*Tel: 908-740-3990. Fax: 908-740-4042. E-mail: alexei.buevich@merck.com.
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Using HMBC and ADEQUATE NMR Data To Define and Differentiate Long-Range Coupling Pathways: Is the Crews Rule Obsolete?
It is well known that as molecules become progressively more proton-deficient, structure elucidation becomes correspondingly more challenging. When the ratio of 1H to 13C and the sum of other heavy atoms falls below 2, an axiom that has been dubbed the “Crews rule” comes into play. The general premise of the Crews rule is that highly proton-deficient molecules may have structures that are difficult, and in some cases impossible, to elucidate using conventional suites of NMR experiments that include proton and carbon reference spectra, COSY, multiplicity-edited HSQC, and HMBC (both 1H–13C and 1H–15N). However, with access to modern cryogenic probes and microcyroprobes, experiments that have been less commonly utilized in the past and new experiments such as inverted 1JCC 1,n-ADEQUATE are feasible with modest sized samples. In this light, it may well be time to consider revising the Crews rule. The complex, highly proton-deficient alkaloid staurosporine (1) is used as a model proton-deficient compound for this investigation to highlight the combination of inverted 1JCC 1,n-ADEQUATE with 1.7 mm cryoprobe technology.

Using HMBC and ADEQUATE NMR Data To Define and Differentiate Long-Range Coupling Pathways: Is the Crews Rule Obsolete?

Gary E Martin
† Discovery and Preclinical Sciences, Process and Analytical Chemistry, Structural Elucidation Group, Merck Research Laboratories, Kenilworth, New Jersey 07033, United States
‡ Discovery and Preclinical Sciences, Process and Analytical Chemistry, Structural Elucidation Group, Merck Research Laboratories, Rahway, New Jersey 07065, United States
§ Discovery and Preclinical Sciences, Process and Analytical Chemistry, Structural Elucidation Group, Merck Research Laboratories, Summit, New Jersey 07901, United States
J. Nat. Prod., 2013, 76 (11), pp 2088–2093
DOI: 10.1021/np400562u
Publication Date (Web): November 6, 2013
Copyright © 2013 The American Chemical Society and American Society of Pharmacognosy
*Phone: 908-473-5398. Fax: 908-473-6559. E-mail: gary.martin2@merck.com.
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